PyRank

Ncats Translator Python Packages

Python packages with the GitHub topic ncats-translator. Sorted by monthly downloads, with stars and forks.
SkyeAv
tablassert

Tablassert turns biomedical spreadsheets (Excel, CSV, TSV) into knowledge graphs ready for NCATS Translator. Declare how your columns map to subject–predicate–object statements in YAML; Tablassert resolves free text to standard CURIEs, attaches provenance and statistical annotations, and emits KGX-compliant nodes and edges.

22K 8 0
biothings
biothings

BioThings API framework - Making high-performance API for biological annotation data

4K 53 28
TranslatorSRI
reasoner-pydantic

Pydantic models for the Reasoner API data formats

2K 4 1
ranking-agent
reasoner-transpiler

A library for converting TRAPI queries into cypher queries, taking into account the biolink predicate hierarchy

835 0 2
biolink
biolinkmg

Schema and generated objects for biolink data model and upper ontology

289 266 91
biothings
biothings-explorer

TRAPI service for BioThings Explorer

279 15 12
ranking-agent
kp-registry

Knowledge Provider Registry

166 0 0
NCATS-Tangerine
mvp-module-library

Collection of modules for executing MVP Workflows

146 1 5
ranking-agent
gamma-viewer

Interactive Translator UI for the Jupyter notebook, using React.

123 0 2
RTXteam
kg2-util

Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)

59 62 11
biothings
biothings-explorer-test

TRAPI service for BioThings Explorer

53 15 12