Napari Plugin Python Packages

napari-spatialdata

Interactive visualization of spatial omics data

bfio

Interface to the Bioformats Java library

napari-video

Napari plugin for working with video files.

napari-matplotlib

Linking napari layers with Matplotlib plots

napari-omero

Browse your OMERO database from within napari.

napari-skimage-regionprops

Feature extraction for labeled objects in images using regionprops from scikit-image

napari-segment-blobs-and-things-with-membranes

A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.

napari-ome-zarr

A napari plugin for zarr backed OME-NGFF images

napari-time-slicer

A meta plugin for processing timelapse data timepoint by timepoint in napari

brainglobe-napari-io

Read and write files from the BrainGlobe neuroanatomy suite

fishfeats

Napari plugin for spatial RNA quantification

napari-chat-assistant

Local AI and deterministic workbench for napari image-analysis workflows

napari-accelerated-pixel-and-object-classification

Pixel and label classification using OpenCL-based Random Forest Classifiers

napari-pyclesperanto-assistant

GPU-accelerated image processing in napari using OpenCL

napari-tmidas

A plugin for batch processing of confocal and whole-slide microscopy images of biological tissues

napari-simpleitk-image-processing

Process and analyze images using SimpleITK in napari

napari-yolov5

Plugin adapted from Ultralytics to bring YOLOv5 into Napari

napari-clusters-plotter

A plugin to use with napari for clustering objects according to their properties

napari-process-points-and-surfaces

Process and analyze surfaces using open3d and vedo in napari

cellfinder-napari

Efficient cell detection in large images

napari-cupy-image-processing

GPU-accelerated image processing using CUDA

napari-allencell-segmenter

A plugin that enables image segmentation provided by Allen Institute for Cell Science

mikro-napari

A napari plugin to interact with and provide functionality for a connected arkitekt server

napari-medical-image-formats

A napari plugin in order to read and write medical image formats such as DICOM, DICOM Series and NIfTI