PyRank

Napari Plugin Python Packages

Python packages with the GitHub topic napari-plugin. Sorted by relevance, with stars and monthly downloads.
tlambert03
napari-omero

Browse your OMERO database from within napari.

23K 40 16
scverse
napari-spatialdata

Interactive visualization of spatial omics data

15K 87 24
PolusAI
bfio

Interface to the Bioformats Java library

11K 15 9
matplotlib
napari-matplotlib

Linking napari layers with Matplotlib plots

9K 45 24
janclemenslab
napari-video

Napari plugin for working with video files.

8K 13 3
haesleinhuepf
napari-skimage-regionprops

Feature extraction for labeled objects in images using regionprops from scikit-image

6K 56 13
ome
napari-ome-zarr

A napari plugin for zarr backed OME-NGFF images

5K 52 26
haesleinhuepf
napari-time-slicer

A meta plugin for processing timelapse data timepoint by timepoint in napari

4K 6 3
haesleinhuepf
napari-segment-blobs-and-things-with-membranes

A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.

3K 31 8
brainglobe
brainglobe-napari-io

Read and write files from the BrainGlobe neuroanatomy suite

3K 15 5
haesleinhuepf
napari-accelerated-pixel-and-object-classification

GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.

2K 46 9
gletort
fishfeats

Napari plugin for spatial RNA quantification

2K 6 2
clEsperanto
napari-pyclesperanto-assistant

GPU-accelerated general purpose image processing and image analysis in napari

2K 36 9
wulinteousa2-hash
napari-chat-assistant

A local agent architecture for semantic-aware interaction between large language models and multidimensional microscopy datasets inside napari

2K 5 1
macromeer
napari-tmidas

Automated batch processing of cell and tissue microscopy image data in Napari

2K 20 1
haesleinhuepf
napari-process-points-and-surfaces

Process and analyze surfaces using vedo in napari.

2K 25 4
haesleinhuepf
napari-simpleitk-image-processing

Process images using SimpleITK in napari

2K 23 4
Image-Analysis-Hub
napari-epyseg

Plugin to run epyseg within napari

1K 2 0
rdemets
napari-yolov5

Plugin adapted from Ultralytics to bring YOLOv5 into Napari

1K 8 1
AllenCell
napari-allencell-segmenter

A plugin that enables image segmentation provided by Allen Institute for Cell Science

1K 20 8
volume-em
empanada-napari

Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari

1K 33 16
CAREamics
careamics-napari

napari plugin for CAREamics

1K 7 3
haesleinhuepf
devbio-napari

A bundle of napari plugins useful for 3D+t image processing and analysis for studying developmental biology.

917 52 13
BiAPoL
napari-clusters-plotter

A plugin to use with napari for clustering objects according to their properties

903 90 10