Nanopore Python Packages

lib-pod5

Pod5: a high performance file format for nanopore reads.

pod5

Pod5: a high performance file format for nanopore reads.

medaka

Sequence correction provided by ONT Research

pyspoa

Python bindings to spoa

dajin2

🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing

sequali

Sequali is a QC tool that generates useful graphs for both short and long-read data.

deepchopper-cli

Genomic Language Model Mitigates Chimera Artifacts in Nanopore Direct RNA Sequencing

deepchopper

Genomic Language Model Mitigates Chimera Artifacts in Nanopore Direct RNA Sequencing

isoquant

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

medaka-cpu

Sequence correction provided by ONT Research

sniffles

Structural variation caller using third generation sequencing

recentrifuge

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

pycoqc

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

nanocompore

RNA modifications detection from Nanopore dRNA-Seq data

pod5-format

Pod5: a high performance file format for nanopore reads.

ampligone

A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

deeprm

Deep learning for RNA Modification

ont-bonito

No description available

ont-remora

Methylation/modified base calling separated from basecalling.

dashingturtle

An application for building structural landscapes of RNA sequence modifications with Nanopore data. 📘 Documentation: https://dashing-turtle.readthedocs.io/

acidoseq

A Python package for studying Acidobacteria

pynanolab

all in one GUI software for data analysis and visualization

hairloom

A tool for analyzing split reads (focusing on long-read data)

bio-anglerfish

Anglerfish - Nanopore reads from Illumina libraries