PyRank

Nanopore Sequencing Python Packages

Python packages with the GitHub topic nanopore-sequencing. Sorted by relevance, with stars and monthly downloads.
LabShengLi
nanome-jax

NANOME (Nanopore methylation) pipeline developed by Li Lab at The Jackson Laboratory

953 34 10
WGLab
nanorepeat

NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

699 19 4
lrslab
nanocem

"nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.

570 18 2
Woodformation1136
nanoprepro

A fully-equipped, fast, memory-efficient pre-processor for ONT transcriptomic data

454 2 0
Woodformation1136
nanoprep-ffm

A fully-equipped, fast, and memory-efficient pre-processor for ONT transcriptomic data

430 2 0
rnajena
dynamont

Segmentation/resquiggling tool for ONT signals.

403 5 1
jkmckenna
smftools

Single Molecule Footprinting Analysis in Python

361 2 0
GoekeLab
xpore

xpore is a python package for Nanopore data analysis of differential RNA modifications.

351 165 24
bioinfomaticsCSU
deepsignal

Detecting methylation using signal-level features from Nanopore sequencing reads

317 118 23
PengNi
deepsignal-plant

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

230 66 11
joshuaowalker
specimux

Dual barcode and primer demultiplexing system for MinION sequenced reads

167 6 0
dietvin
pod5viewer

GUI for inspecting ONT pod5 files

166 34 1
nanoporetech
wahoo

Wahoo placeholder

63 116 43
tjiangHIT
rmetl

rMETL - realignment-based Mobile Element insertion detection Tool for Long read

35 21 4