Nanopore Sequencing Python Packages

segshape

RNA secondary structure prediction from Nanopore direct RNA sequencing.

nanome-jax

NANOME (Nanopore methylation) pipeline developed by Li Lab at The Jackson Laboratory

dynamont

Segmentation/resquiggling tool for ONT signals.

smftools

Single Molecule Footprinting Analysis in Python

nanorepeat

NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

deepsignal-plant

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

nanocem

"nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.

nanoprep-ffm

A fully-equipped, fast, memory-efficient pre-processor for ONT transcriptomic data

deepsignal

Detecting methylation using signal-level features from Nanopore sequencing reads

xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing

specimux

High-performance dual barcode and primer demultiplexer for MinION sequenced reads, optimized for fungal DNA barcoding.

pod5viewer

GUI for inspecting POD5 files

nanoprepro

A fully-equipped, fast, memory-efficient pre-processor for ONT transcriptomic data

wahoo

Training models for basecalling Oxford Nanopore reads

rmetl

rMETL - realignment-based Mobile Element insertion detection Tool for Long read