Nanopore Sequencing Python Packages

specimux

High-performance dual barcode and primer demultiplexer for MinION sequenced reads, optimized for fungal DNA barcoding.

dynamont

Dynamont is a bioinformatics tool for segmenting/resquiggling Oxford Nanopore Technologies (ONT) sequencing signals using dynamic programming and HMM-based approaches. It is designed to align raw nanopore signals to nucleotide sequences and supports DNA and RNA datasets.

smftools

Single Molecule Footprinting Analysis in Python

nanome-jax

NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)

nanorepeat

NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

nanocem

"nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.

xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing

deepsignal

Detecting methylation using signal-level features from Nanopore sequencing reads

nanoprep-ffm

A fully-equipped, fast, memory-efficient pre-processor for ONT transcriptomic data

pod5viewer

GUI for inspecting POD5 files

deepsignal-plant

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

segshape

RNA secondary structure prediction from Nanopore direct RNA sequencing.

nanoprepro

A fully-equipped, fast, memory-efficient pre-processor for ONT transcriptomic data

wahoo

Training models for basecalling Oxford Nanopore reads

rmetl

rMETL - realignment-based Mobile Element insertion detection Tool for Long read