PyRank

Multiplexed Imaging Python Packages

Python packages with the GitHub topic multiplexed-imaging. Sorted by relevance, with stars and monthly downloads.
prism-oncology
sopa

Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc.)

5K 286 51
angelolab
ark-analysis

Integrated pipeline for multiplexed image analysis

3K 107 31
calico
spatial-lda

Probabilistic topic model for identifying cellular micro-environments.

1K 28 12
nadeemlab
spatialprofilingtoolbox

Toolbox for spatial analysis of single cell data.

880 23 2
camlab-bioml
astir

astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨

562 56 13
complextissue
spatiomic

A python toolbox for spatial omics analysis.

391 17 0
AlanRace
pyimc

Rust library for reading imaging mass cytometry (IMC) data stored in .mcd files.

250 2 0
JoshuaHess12
hdi-utils

High-dimensional image data utilities

219 0 0
nadeemlab
smprofiler

Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)

147 23 2
JoshuaHess12
miaaim-python

Multi-omics Image Alignment and Analysis by Information Manifolds

78 5 1