PyRank

Multiplexed Imaging Python Packages

Python packages with the GitHub topic multiplexed-imaging. Sorted by relevance, with stars and monthly downloads.
prism-oncology
sopa

Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

5K 277 50
angelolab
ark-analysis

Toolbox for analysis on segmented images from MIBI.

4K 105 30
calico
spatial-lda

Probabilistic topic model for identifying cellular micro-environments.

1K 28 12
nadeemlab
spatialprofilingtoolbox

Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)

1K 23 2
camlab-bioml
astir

No description available

744 57 13
complextissue
spatiomic

A python toolbox for spatial omics analysis.

384 17 0
AlanRace
pyimc

Rust library for reading imaging mass cytometry (IMC) data stored in .mcd files.

231 2 0
nadeemlab
smprofiler

Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)

175 23 2
JoshuaHess12
hdi-utils

General importing and utility functions for high-dimensional image data

162 0 0
JoshuaHess12
miaaim-python

MIAAIM: Multi-omics Image Alignment and Analysis by Information Manifolds

52 5 1