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Multiple Sequence Alignment Python Packages

Python packages with the GitHub topic multiple-sequence-alignment. Sorted by relevance, with stars and monthly downloads.
althonos
pyfamsa

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

10K 41 4
sokrypton
colabfold

Making Protein folding accessible to all!

10K 3K 719
moshi4
pymsaviz

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

8K 192 23
nanoporetech
pyspoa

Python bindings to spoa

6K 22 4
althonos
pytrimal

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!

4K 27 2
yangao07
pyabpoa

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

3K 137 22
Maryam-Haghani
neffy

NEFF Calculator and MSA File Converter

988 13 1
clabe-wekesa
sato

A python pipeline that brings together tools for generation of consensus sequence, multiple sequence alignment, and phylogenetic analysis.

681 0 0
microsoft
evodiff

Generation of protein sequences and evolutionary alignments via discrete diffusion models

630 669 108
samberry19
bioviper

Enhancements to Biopython for working with biological data

385 7 1
ramonamerong
hladownload

A tool for downloading HLA alleles, epitopes and frequencies

240 4 1
psipred
dmpfold

Protein structure prediction with the DMPfold2 method

128 58 15
jasperlinthorst
reveal

Graph based multi genome aligner

115 49 3
benhid
sequoya

Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics

62 18 3
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