multiple-sequence-alignment
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
Making Protein folding accessible to all!
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Python bindings to spoa
NEFF Calculator and MSA File Converter
Generation of protein sequences and evolutionary alignments via discrete diffusion models
A python pipeline that brings together tools for generation of consensus sequence, multiple sequence alignment, and phylogenetic analysis.
Enhancements to Biopython for working with biological data
A tool for downloading HLA alleles, epitopes and frequencies
All-vs-all protein structure-prediction panels with one alignment per sequence, for AlphaFold 3, Boltz-2, Protenix, Chai-1, ColabFold, AlphaFold2-Multimer, AlphaFold Server and SeedFold
Graph based multi genome aligner
Fast and accurate protein structure prediction
Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics
