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Multiple Sequence Alignment Python Packages

Python packages with the GitHub topic multiple-sequence-alignment. Sorted by relevance, with stars and monthly downloads.
althonos
pyfamsa

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

39K 45 4
sokrypton
colabfold

Making Protein folding accessible to all!

11K 3K 732
moshi4
pymsaviz

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

9K 196 22
nanoporetech
pyspoa

Python bindings to spoa

6K 22 4
althonos
pytrimal

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!

5K 27 2
yangao07
pyabpoa

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

3K 139 24
Maryam-Haghani
neffy

NEFF Calculator and MSA File Converter

970 15 1
microsoft
evodiff

Generation of protein sequences and evolutionary alignments via discrete diffusion models

791 672 109
clabe-wekesa
sato

A python pipeline that brings together tools for generation of consensus sequence, multiple sequence alignment, and phylogenetic analysis.

431 0 0
samberry19
bioviper

Enhancements to Biopython for working with biological data

330 7 1
ramonamerong
hladownload

Python command line program and module for retrieving HLA alleles, frequencies and eplets.

293 4 1
psipred
dmpfold

Fast and accurate protein structure prediction

240 58 15
jasperlinthorst
reveal

Graph based multi genome aligner

139 49 3
benhid
sequoya

Solving Multiple Sequence Alignments with Python

87 18 3
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