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Multi Omics Python Packages

Python packages with the GitHub topic multi-omics. Sorted by relevance, with stars and monthly downloads.
scverse
mudata

Multimodal Data (.h5mu) implementation for Python

158K 121 22
scverse
muon

muon is a multimodal omics Python framework

29K 267 35
pievos101
gnnsubnet

Disease subnetwork detection with explainable Graph Neural Networks

2K 27 5
xing-lab-pitt
graphvelo

Inferring multi-modality dynamics for single cell genomics data

1K 13 2
glasgowcompbio
pymultiomics

Python toolbox for multi-omics data mapping and analysis

989 27 6
bioFAM
mofaflex

factor models for omics data

727 41 3
jan-forest
autoencodix

Python library for multi-omics data integration by autoencoders

676 8 2
RasmussenLab
move-dl

Multi-omics variational autoencoder

560 96 33
PMBio
mudatasets

Multimodal datasets, in MuData format

535 4 1
khoatran1995
platygeno

Unsupervised Gene Discovery via Evo 2 & SAE Interpretability

378 0 0
sdsc-ordes
modos

SMOC Multi-Omics Digital Object System API

359 2 1
JonnyTran
openomics

A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.

349 36 11
BIMSBbioinfo
maui-tools

Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit

331 50 21
xu62u4u6
pymaftools

A Python toolkit for MAF files and multi-omics cancer genomics — parsing, analysis, ML, and publication-ready visualization.

305 7 2
epruesse
ymp

Flexible multi-omic pipeline system

284 17 4
bhi-kimlab
neticspy

Python implementation of NetICS (Network-based Integration of Multi-omics data).

224 1 1
inukj
monti

A multi-omics integrative analysis tool

118 5 8
ZJUFanLab
scotch-sc

SCOTCH: Single-Cell multi-modal integration using Optimal Transport and Cell matCHing

31 6 0
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