Multi Omics Integration Python Packages

nplinker

A python framework for microbial natural products data mining by integrating genomics and metabolomics data

pathintegrate

PathIntegrate Python package for pathway-based multi-omics data integration

intelligrate

Diversity-aware sample selection and kNN-based extrapolation of a partially measured data layer to the complete dataset.

cosmos-linxulab

COSMOS is a computational tool crafted to overcome the challenges associated with integrating spatially resolved multi-omics data. This software harnesses a graph neural network algorithm to deliver cutting-edge solutions for analyzing biological data that encompasses various omics types within a spatial framework.

bio-smart

SMART is a computational framework for spatial multi-omic integration. SMART leverages a modality-independent modular and stacking framework with spatial coordinates and adjusts the aggregation using triplet relationships.

myevae

A multiomics variational autoencoder for risk prediction in newly diagnosed multiple myeloma

cosmos-lx

COSMOS is a computational tool crafted to overcome the challenges associated with integrating spatially resolved multi-omics data. This software harnesses a graph neural network algorithm to deliver cutting-edge solutions for analyzing biological data that encompasses various omics types within a spatial framework.