PyRank

Mri Python Packages

Python packages with the GitHub topic mri. Sorted by relevance, with stars and monthly downloads.
mikgroup
sigpy

Python package for signal processing, with emphasis on iterative methods

13K 337 104
rordenlab
dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

13K 1K 257
nipreps
smriprep

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

11K 164 46
mmuckley
torchkbnufft

A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.

8K 250 48
deepinv
deepinv

DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning

7K 735 169
imr-framework
pypulseq

Pulseq in Python

7K 201 89
MRsources
mrzerocore

Python package and documentation for MR-zero

7K 72 24
ywatanabe1989
scitex-dataset

Multi-domain scientific dataset fetcher — neuroscience, biology, pharmacology, medical. Part of SciTeX.

6K 0 0
neuropoly
totalspineseg

Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.

5K 102 11
facebookresearch
fastmri

A large-scale dataset of both raw MRI measurements and clinical MRI images.

4K 2K 420
mckib2
phantominator

Generate numerical phantoms.

4K 44 2
mckib2
ssfp

SSFP simulation and algorithms.

4K 13 1
khanlab
zarrnii

Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

4K 10 4
BrainLesion
auxiliary

helpful functions for handling biomedical-imaging data in DICOM or NIfTI format

3K 2 3
FiRMLAB-Pisa
pygrog

An interoperable GROG package to accelerate Non-Cartesian MR reconstructions.

3K 0 0
nipreps
mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain.

3K 359 138
paquiteau
brainweb-dl

Download BrainWeb MRI data

3K 11 3
Donders-Institute
bidscoin

BIDScoin converts your source-level neuroimaging data to BIDS

2K 156 37
BrainLesion
brainles-preprocessing

preprocessing tools for multi-modal 3D brain imaging

2K 33 8
jcreinhold
intensity-normalization

Normalize MR image intensities in Python

2K 342 57
casperdcl
brainweb

BrainWeb-based multimodal models of 20 normal brains

2K 38 11
DelinteNicolas
time-python

This repository contains the code of UtiliziNg tRActography to uncoVEr muLti-fixel microstructure (UNRAVEL).

2K 28 1
mrphys
tensorflow-mri

A Library of TensorFlow Operators for Computational MRI

1K 49 6
LREN-CHUV
airflow-imaging-plugins

Airflow plugins to support Neuroimaging tasks.

1K 15 2