Mri Python Packages

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

mrzerocore

Python package and documentation for MR-zero

sigpy

Python package for signal processing, with emphasis on iterative methods

pypulseq

Pulseq in Python

torchsim

A feature-rich MR simulator supporting massive parallelization on GPU and automatic differentiation.

smriprep

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

seqeyes-python

Cross-platform interactive MR Pulseq Sequence Viewer with 3D K-space visualization

totalspineseg

Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.

torchkbnufft

A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.

bids-manager

GUI and CLI tool for raw-to-BIDS conversion, curation, metadata editing, and validation for MRI, EEG, MEG, and physiological recordings.

deepinv

DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning

brainweb-dl

Brainweb Dataset downloader

intensity-normalization

Normalize MR image intensities in Python

brainweb

BrainWeb: Multimodal models of 20 normal brains

mrarbgrad

Python library for designing the gradient waveforms for arbitrary MRI trajectories.

mrsd

A toolkit to generate MR sequence diagrams

blochsim

A feature-rich MR simulator supporting massive parallelization on GPU and automatic differentiation.

time-python

This repository contains the code of UtiliziNg tRActography to uncoVEr muLti-fixel microstructure (UNRAVEL).

fastmri

A large-scale dataset of both raw MRI measurements and clinical MRI images.

bidscoin

BIDScoin converts your source-level neuroimaging data to BIDS

auxiliary

helpful functions for handling biomedical-imaging data in DICOM or NIfTI format

scitex-dataset

Multi-domain scientific dataset fetcher (neuroscience, biology, medical)

brainles-preprocessing

preprocessing tools for multi-modal 3D brain imaging

mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain