Mri Images Python Packages

neurocombat

Harmonization of multi-site imaging data with ComBat (Python)

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

protocol

generic framework to develop protocols, with an initial focus medical imaging acquisition

visualqc

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

imperandi

CT/MR imaging preprocessing pipeline for DICOM harmonization, conversion, segmentation, radiomics & cohort building (medical imaging, Python CLI)

nii2dcm

nii2dcm: NIfTI to DICOM creation with Python

freesurfer-volume-reader

Python script & library to read hippocampal volumes computed by Freesurfer & ASHS

mrqa

mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance

strainmap

No description available

napari-deepmeta

Segment mouse lungs and metastasis on MRI images.

pydcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

quicknat-pytorch

PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty

dcm2dir

Dicom Organizer recursively scans a given root folder for DICOM files, extracts relevant metadata, and organizes the files into a structured output folder.