Motif Analysis Python Packages

fp-tools-bio

Command-first ATAC-seq footprinting, motif analysis, and reproducible interactive reports

atarva

ATaRVa - Analysis of Tandem Repeat Variation

gp3sequencespy

Transparent, reproducible sequence analysis in Python. Audit ordered categorical data, discover recurring structure, compare trajectories, model transitions and latent states, test group differences, and report every analytical choice.

spatialquery

Efficient tool to query spatial pattern of spatial-modalities data

rgt

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

biobase

A home for all biological/bioinformatics constants from protein strings to BLOSUM matrices.

automotifs

Automatic Motif Detection wrapper for dotmotif

cytorete

Cell-type-resolved gene regulatory network inference from single-cell data.

rash-hit-fractal-analysis

Exact vector geometry box-counting & fractal dimension (Db) engine for SVG motifs, textile design & architecture.

rash-hit-fractal-analiz-studio

Exact vector geometry box-counting & fractal dimension (Db) engine for SVG motifs, textile design & architecture.

leitmotif

Discovering Leitmotifs in Multidimensional Time Series

spymot

A comprehensive protein analysis platform that combines motif detection with 3D structure validation using AlphaFold2 confidence scores. Designed for cancer biology research, drug discovery, and functional genomics.

beautifulmotifs

Detect and extract beautiful musical motifs from MIDI files with transformers

mamotif

An integrative toolkit for detecting cell type-specific regulators

pytfmpval

Python bindings for the TFM-Pvalue program.

rash-hit-fractal-studio

Exact vector geometry box-counting & fractal dimension (Db) engine for SVG motifs, textile design & architecture.