Motif Analysis Python Packages

atarva

ATaRVa - Analysis of Tandem Repeat Variation

spatialquery

Spatial query tools for analyzing spatial transcriptomics data

biobase

A home for all biological/bioinformatics constants from protein strings to BLOSUM matrices.

rgt

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

automotifs

Automatic Motif Detection wrapper for dotmotif

leitmotif

Discovering Leitmotifs in Multidimensional Time Series

spymot

Advanced Protein Motif Detection with AlphaFold Structural Validation

beautifulmotifs

Detect and extract beautiful musical motifs from MIDI files with transformers

mamotif

An integrative toolkit for detecting cell type-specific regulators

pytfmpval

Python bindings for the TFM-Pvalue program.