Molecular Visualization Python Packages

hofmann

Ball-and-stick crystal structure viewer for Python. Publication-quality vector output (SVG, PDF) and trajectory animations (GIF, MP4) via matplotlib, with ASE and pymatgen interoperability.

vmol

v -- A simple X11 molecular viewer

ammolite

Visualize structure data from Biotite with PyMOL

refua-notebook

Jupyter UI extensions for drug discovery visualization - ADMET, 3D complex viewer, SMILES drawing

plotlymol

A package to create interactive molecular visualizations using Plotly

molecular-string-renderer

A flexible library for rendering molecular structures from various string representations