Molecular Biology Python Packages

dna-features-viewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

34K 689 105

splicecraft

In-Terminal Plasmid Design Workbench

33K 74 5

cryosparc-tools

Python library that enables scripting access to CryoSPARC, a cryo-EM software package.

25K 47 10

glycowork

Package for processing and analyzing glycans and their role in biology.

4K 91 19

multimolecule

Accelerate Molecular Biology Research with Machine Learning

3K 53 8

dnacauldron

:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

1K 66 10

pypath-omnipath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

1K 162 48

streq

🧬 Python utilities for working with nucleotide sequence strings.

918 0 0

dna-features-viewer-lite

Plot features from DNA sequences (e.g. Genbank) with Python

688 689 105

dasi

A Python molecular biology CAD tool with a dead-simple user interface

618 13 1

primer3plus

A easy-to-use Python API for Primer3 primer design.

583 16 7

bandwagon

Simulate DNA band patterns for gel migration experiments.

510 20 3

dnadesign

Python bindings for dnadesign

481 38 1

caravagene

Plot multi-part genetic constructs.

376 26 2

crazydoc

Read DNA sequences from colourful Microsoft Word documents

368 34 4

bioexplorer

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

326 68 11

monte-barcode

🔴🟢🔵⚫️ Generating sets of random DNA sequences optimized for use in high-throughput sequencing.

165 0 0

primerlab-genomic

A modular, AI-friendly bioinformatics framework for automated primer and probe design.

135 0 0

ogilo-array

⛓️ Automating construction of oligo library sequences for oligo array synthesis.

129 0 0

mediamaker

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

74 68 11

pylabrat

A basic science lab framework aimed at reproducibility and lab management.

74 15 5

cisvar

cisVar scripts.

50 6 0