Molecular Biology Python Packages

dna-features-viewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

64K 692 105

splicecraft

Terminal-based plasmid map viewer, sequence editor, and cloning/mutagenesis workbench in pure Python

52K 168 11

cryosparc-tools

Python library that enables scripting access to CryoSPARC, a cryo-EM software package.

19K 48 10

multimolecule

Accelerate Molecular Biology Research with Machine Learning

4K 56 9

glycowork

Package for processing and analyzing glycans and their role in biology.

3K 93 19

dnacauldron

:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

2K 66 10

pypath-omnipath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

1K 163 54

primer3plus

A easy-to-use Python API for Primer3 primer design.

818 16 7

bandwagon

🎺 Plot DNA digestion band patterns with Python

585 20 3

dasi

A Python molecular biology CAD tool with a dead-simple user interface

580 13 1

dnadesign

Python bindings for dnadesign

532 38 1

dna-features-viewer-lite

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

531 692 105

caravagene

🎨 Python library to plot multi-part genetic constructs

360 26 2

crazydoc

Read DNA sequences from colourful Microsoft Word documents

357 34 4

bioexplorer

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

317 68 11

streq

🧬 Python utilities for working with nucleotide sequence strings.

240 0 0

checkmyclones

Historical archive: Python 2.7-era tool for checking Sanger sequencing results against references. Not maintained.

203 2 0

primerlab-genomic

A modular genomic toolkit focused on automated primer design, sequence validation, and workflow orchestration. Built for reliability, reproducibility, and scalable bioinformatics workflows.

200 0 0

monte-barcode

🔴🟢🔵⚫️ Generating sets of random DNA sequences optimized for use in high-throughput sequencing.

191 0 0

ogilo-array

⛓️ Automating construction of oligo library sequences for oligo array synthesis.

163 0 0

pylabrat

A basic science lab framework aimed at reproducibility and lab management.

102 15 5

mediamaker

Media Maker Python SDK for Blue Brain BioExplorer

100 68 11

cisvar

Calculate both pre and post frequencies for ChIP or ATAC style data

79 6 0