Molecular Biology Python Packages

dna-features-viewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

58K 705 106

splicecraft

Terminal-based plasmid map viewer, sequence editor, and cloning/mutagenesis workbench in pure Python

17K 246 17

glycowork

Package for processing and analyzing glycans and their role in biology.

14K 101 19

cryosparc-tools

Python library that enables scripting access to CryoSPARC, a cryo-EM software package.

12K 52 12

dnacauldron

:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

2K 67 10

multimolecule

Accelerate Molecular Biology Research with Machine Learning

2K 57 9

pypath-omnipath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

933 164 56

dnadesign

A lua package for designing DNA.

439 38 1

primer3plus

A easy-to-use Python API for Primer3 primer design.

346 17 7

bandwagon

🎺 Plot DNA digestion band patterns with Python

329 20 3

dasi

A Python molecular biology CAD tool with a dead-simple user interface

288 8 1

caravagene

🎨 Python library to plot multi-part genetic constructs

263 27 2

crazydoc

Read DNA sequences from colourful Microsoft Word documents

232 34 4

dna-features-viewer-lite

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

209 705 106

bioexplorer

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

198 69 12

pylabrat

A package designed to improve reproducibility, simplify lab/project management, and support common biomedical research tasks.

164 15 5

streq

🧬 Python utilities for working with nucleotide sequence strings.

164 0 0

monte-barcode

🔴🟢🔵⚫️ Generating sets of random DNA sequences optimized for use in high-throughput sequencing.

144 0 0

checkmyclones

Historical archive: Python 2.7-era tool for checking Sanger sequencing results against references. Not maintained.

126 2 0

ogilo-array

⛓️ Automating construction of oligo library sequences for oligo array synthesis.

101 0 0

mediamaker

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

47 69 12

cisvar

cisVar scripts.

40 6 1

reactomepy

Explore biomolecular pathways in Reactome from the command-line or a Python script

1 23 4