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Molecular Biology Python Packages

Python packages with the GitHub topic molecular-biology. Sorted by relevance, with stars and monthly downloads.
Edinburgh-Genome-Foundry
dna-features-viewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

34K 689 105
Binomica-Labs
splicecraft

In-Terminal Plasmid Design Workbench

33K 74 5
cryoem-uoft
cryosparc-tools

Python library that enables scripting access to CryoSPARC, a cryo-EM software package.

25K 47 10
BojarLab
glycowork

Package for processing and analyzing glycans and their role in biology.

4K 91 19
DLS5-Omics
multimolecule

Accelerate Molecular Biology Research with Machine Learning

3K 53 8
Edinburgh-Genome-Foundry
dnacauldron

:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

1K 66 10
saezlab
pypath-omnipath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

1K 162 48
scbirlab
streq

🧬 Python utilities for working with nucleotide sequence strings.

918 0 0
Edinburgh-Genome-Foundry
dna-features-viewer-lite

Plot features from DNA sequences (e.g. Genbank) with Python

688 689 105
jvrana
dasi

A Python molecular biology CAD tool with a dead-simple user interface

618 13 1
jvrana
primer3plus

A easy-to-use Python API for Primer3 primer design.

583 16 7
Edinburgh-Genome-Foundry
bandwagon

Simulate DNA band patterns for gel migration experiments.

510 20 3
koeng101
dnadesign

Python bindings for dnadesign

481 38 1
Edinburgh-Genome-Foundry
caravagene

Plot multi-part genetic constructs.

376 26 2
Edinburgh-Genome-Foundry
crazydoc

Read DNA sequences from colourful Microsoft Word documents

368 34 4
BlueBrain
bioexplorer

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

326 68 11
scbirlab
monte-barcode

🔴🟢🔵⚫️ Generating sets of random DNA sequences optimized for use in high-throughput sequencing.

165 0 0
engkinandatama
primerlab-genomic

A modular, AI-friendly bioinformatics framework for automated primer and probe design.

135 0 0
scbirlab
ogilo-array

⛓️ Automating construction of oligo library sequences for oligo array synthesis.

129 0 0
BlueBrain
mediamaker

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

74 68 11
sdhutchins
pylabrat

A basic science lab framework aimed at reproducibility and lab management.

74 15 5
TheFraserLab
cisvar

cisVar scripts.

50 6 0
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