Mlst Python Packages

chewbbaca

BSR-Based Allele Calling Algorithm

mlstclassifier-cd

multi-locus sequence type clade classifier for Clostridioides difficile

grapetree

GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click the first link to launch: https://achtman-lab.github.io/GrapeTree/MSTree_holder.html

chewbbaca-nserver

chewBBACA comunicates with the nomenclature server HUUURRR

btyper3

In silico taxonomic classification of Bacillus cereus group isolates using assembled genomes

stringmlst

Fast k-mer based tool for alignment and assembly-free multi locus sequence typing (MLST) directly from genome sequencing reads.

taranys

cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.