Missing Values Python Packages

pypots

A Python toolkit/library for reality-centric machine/deep learning & data mining on partially-observed time series, with 50+ SOTA neural network models for scientific analysis tasks (imputation, classification, clustering, forecasting, anomaly detection, cleaning) on incomplete industrial irregularly-sampled multivariate TS with NaN missing values

pygrinder

PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing

sentinel-value

Sentinel Values - unique global singleton objects, akin to None, NotImplemented and Ellipsis.

pyrregular

Irregular time series in Python: datasets, classifiers and the benchmark from our ICLR 2026 paper.

imputegap

ImputeGAP is a comprehensive Python library for imputation of missing values in time series data. It implements user-friendly APIs to easily visualize, analyze, and repair incomplete time series datasets.

pycorruptor

PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing

ppca-rs

Python+Rust implementation of the Probabilistic Principal Component Analysis model

scikit-na

Missing Data Analysis in Python

pandas-missing

A pandas extension to explore and handle missing values.

edasql

edaSQL is a python library to bridge the SQL with Exploratory Data Analysis where you can connect to the Database and insert the queries. The query results can be passed to the EDA tool which can give greater insights to the user.

missingdata

missing data handing: visualize and impute

ycimpute

A missing value imputation library based on machine learning. It's implementation missForest, simple edition of MICE(R pacakge), knn, EM, etc....

overnan

Oversampling for Imbalanced Learning with Missing Values

jackpots

A Python toolkit/library for reality-centric machine/deep learning & data mining on partially-observed time series, with 50+ SOTA neural network models for scientific analysis tasks (imputation, classification, clustering, forecasting, anomaly detection, cleaning) on incomplete industrial irregularly-sampled multivariate TS with NaN missing values

xgbimputer

Extreme Gradient Boost imputer for Machine Learning.

eda-sql

edaSQL is a python library to bridge the SQL with Exploratory Data Analysis where you can connect to the Database and insert the queries. The query results can be passed to the EDA tool which can give greater insights to the user.

handle-missing-csv

Create and save .csv file with replaced categorical and non-categorical missing values

para-impute

Missing value imputation package in Python specialized for High-performance computing.