Missing Data Python Packages

missingno

Missing data visualization module for Python.

pygrinder

PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing

knnimpute

Python implementations of kNN imputation

snpio

SNPio is a Python API for population genetic file processing, filtering, and analysis. It is designed to be a user-friendly tool for the manipulation of population genetic data in a variety of formats. SNPio can be used to filter data based on missingness, MAF and MAC, singletons, biallelic, and monomorphic sites. It can also generate summary statistics for population genetic analyses.

impyute

Data imputations library to preprocess datasets with missing data

ciss-vae

Python package for CISS-VAE.

debias-infer

Python and R Packges for Efficient Inference on High-Dimensional Linear Models With Missing Outcomes

mdatagen

mdatagen: A Python Library for the Generation of Artificial Missing Data

ppca-rs

Python+Rust implementation of the Probabilistic Principal Component Analysis model

ppca-py

[ppca-cpp] Probabilistic PCA (PPCA) with missing-data support — fast C++ core, clean Python API.

mlimputer

MLimputer: Missing Data Imputation Framework for Machine Learning

dfaudit

Audit your pandas DataFrame before you trust it - missing values, soft missing, cardinality and top categories in one call.

tck

Kernel similarity for classification and clustering of multi-variate time series with missing values.

tsgap

Composable time-series missingness simulation for imputation benchmarking

askcarl

Gaussian mixture models with support for missing values and upper limits in some features.

rego

Automatic Time Series Forecasting and Missing Values Imputation

visualimiss

Visualize missing data

pycorruptor

PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing

adenine

ADENINE: A Data ExploratioN PipelINE

vizdataquality

Python package for visualizing data quality

missingdata

missing data handing: visualize and impute

imml

A Python package for integrating, processing, and analyzing incomplete multi-modal datasets.

scikit-na

Missing Data Analysis in Python

imputena

Python package that allows both automated and customized treatment of missing values in datasets