Missing Data Python Packages

missingno

Missing data visualization module for Python.

pygrinder

PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing

knnimpute

Python implementations of kNN imputation

snpio

API to read, write, and filter DNA sequence alignment files

imml

A Python package for integrating, processing, and analyzing incomplete multi-modal datasets.

ciss-vae

Python package for CISS-VAE.

vizdataquality

Python package for visualizing data quality

impyute

Data imputations library to preprocess datasets with missing data

mdatagen

A Python Library for the Generation of Artificial Missing Data

ppca-py

[ppca-cpp] Probabilistic PCA (PPCA) with missing-data support — fast C++ core, clean Python API.

debias-infer

Efficient Inference on High-Dimensional Linear Models With Missing Outcomes

rego

Automatic Time Series Forecasting and Missing Values Imputation

ppca-rs

Python+Rust implementation of the Probabilistic Principal Component Analysis model

mlimputer

MLimputer: Missing Data Imputation Framework for Machine Learning

askcarl

Gaussian Mixture Model likelihood with support for heterogeneous missing and censored (upper limit) data.

pycorruptor

A Python Toolbox for Data Corruption

visualimiss

Small Python package to visualize missing data

scikit-na

Missing Values Analysis for Data Science

adenine

A Data ExploratioN pIpeliNE

tck

Kernel similarity for classification and clustering of multi-variate time series with missing values.

missingdata

missing data visualization and imputation

pandas-missing

A pandas extension to explore and handle missing values.

imputena

Package that allows both automated and customized treatment of missing values in datasets using Python.

pristinizer

Pristinizer is a lightweight Python package for automatic data cleaning, exploratory data analysis (EDA), and missing data visualization for pandas DataFrames. It helps data scientists and ML engineers quickly clean and understand datasets with minimal effort.