Missing Data Python Packages

missingno

Missing data visualization module for Python.

pygrinder

PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing

knnimpute

Python implementations of kNN imputation

awesomepmc

Copula-based pairwise Markov chains for non-Gaussian time-series classification, estimation, imputation and forecasting.

snpio

API to read, write, and filter DNA sequence alignment files

awesomepkf

Python library for pairwise Kalman filtering and smoothing on Gaussian pairwise Markov models: linear PKF, nonlinear EPKF/UPKF/PPF, six equivalent linear smoothers, EM learning and back-action tests. Reference code for two companion papers.

impyute

Data imputations library to preprocess datasets with missing data

pcrsaits

Lightweight post-hoc residual correction for multivariate time-series imputation with SAITS, BRITS, and CSDI. PyPI package, reproducible experiments, and research ablations.

ciss-vae

Python package for CISS-VAE.

framepeek

Lightweight, structured exploratory data analysis for pandas DataFrames with overview, column profiling, missing values, duplicates, outliers, correlations, and data quality warnings in one function call.

accmv

Validated R and Python implementations of inference under the available complete-case missing value assumption

rego

Automatic Time Series Forecasting and Missing Values Imputation

debias-infer

Python and R Packges for Efficient Inference on High-Dimensional Linear Models With Missing Outcomes

pycorruptor

PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing

ppca-rs

Python+Rust implementation of the Probabilistic Principal Component Analysis model

ppca-py

[ppca-cpp] Probabilistic PCA (PPCA) with missing-data support — fast C++ core, clean Python API.

scikit-na

Missing Data Analysis in Python

mdatagen

A Python Library for the Generation of Artificial Missing Data

imml

A Python package for integrating, processing, and analyzing incomplete multi-modal datasets.

tck

Kernel similarity for classification and clustering of multi-variate time series with missing values.

vizdataquality

Python package for visualizing data quality

askcarl

Gaussian Mixture Model likelihood with support for heterogeneous missing and censored (upper limit) data.

pandas-missing

A pandas extension to explore and handle missing values.

adenine

ADENINE: A Data ExploratioN PipelINE