Mimic Iii Python Packages

pycyclops

A toolkit for evaluating and monitoring AI models in clinical settings

bloatectomy

Bloatectomy: a method for the identification and removal of duplicate text in the bloated notes of electronic health records and other documents.

zensols-mimic

A utility library for parsing the MIMIC-III corpus

zensols-mimicsid

This repository contains the a Python package to automatically segment and identify sections of clinical notes, such as electronic health record (EHR) medical documents.

torchmimic

PyTorch library for MIMIC III Benchmark experiments

mimic3py

A Python library to load and analyze the MIMIC III Critical Care Database

ehrax

io+hdf5+lazy-loading+processing-pipelines for EHRs and generic PyTrees for JAX friendly tasks, mainly ML

yaib

🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109

mimic-utils

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

zensols-dsprov

Provenience of discharge summaries Pythonic access (BioNLP paper)