Mimic Iii Python Packages

pycyclops

Framework for healthcare ML implementation

yaib

🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109

zensols-mimic

A utility library for parsing the MIMIC-III corpus

bloatectomy

A python package for removing duplicate text in clinical notes or other documents

zensols-mimicsid

MIMIC-III corpus parsing and section prediction with MedSecId (COLING paper)

torchmimic

PyTorch library for MIMIC III Benchmark experiments

ehrax

EHRs io+processing for JAX+equinox compatible tasks, e.g. mainly ML.

mimic3py

A Python library to load and analyze the MIMIC III Critical Care Database.

mimic-utils

Utilities to support building and analyzing the MIMIC database(s)

zensols-dsprov

Provenience of discharge summaries Pythonic access (BioNLP paper)