Mimic Iii Python Packages

pycyclops

A toolkit for evaluating and monitoring AI models in clinical settings

inflammation-prediction-risk-models

Early prediction of inflammation from ICU time-series data (XGBoost) — runs end-to-end on synthetic data; original MIMIC-III workflow preserved for credentialed users.

bloatectomy

A python package for removing duplicate text in clinical notes or other documents

zensols-mimic

MIMIC III Corpus Parsing

zensols-mimicsid

MIMIC-III corpus parsing and section prediction with MedSecId (COLING paper)

mimic-utils

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

mimic3py

A Python library to load and analyze the MIMIC III Critical Care Database

yaib

🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109

ehrax

io+hdf5+lazy-loading+processing-pipelines for EHRs and generic PyTrees for JAX friendly tasks, mainly ML

torchmimic

PyTorch library for MIMIC III Benchmark experiments

zensols-dsprov

Provenience of discharge summaries Pythonic access (BioNLP paper)