Microsatellite Python Packages

pytrf

a python package for finding tandem repeats from genomic sequences

stria

a python package for finding tandem repeats from genomic sequences

massgenotyping

Python package for microsatellite genotyping from highly multiplexed amplicon sequencing data

mlg-assign

Multi-Locus Genotypes (MLGs) are frequently used to carry out population genetics of clonal organisms. Tools to assign genotyped individuals to MLGs were integrated in some genetic software. However, these tools usually fail to appropriately deal with missing data.