PyRank

Microbiome Analysis Python Packages

Python packages with the GitHub topic microbiome-analysis. Sorted by monthly downloads, with stars and forks.
GPZ-Bioinfo
tmap

topological data analysis of population-scale microbiomes

415 34 13
amnona
dbbact-calour

dbBact (https://dbbact.org) interface for Calour (https://github.com/biocore/calour) for microbiome 16S analysis

324 1 0
JelenaBanjac
microbiome-toolbox

Early Life Microbiome Toolbox

227 10 2
raeslab
dyspyosis

A python package to calculate the dysbiosis score in microbiome datasets

119 1 1
smdabdoub
qiime-tools

Tools for phylogenetic data analysis including visualization and cluster-computing support.

101 15 3
jordiabante
biodive

A reference-free statistical approach to diversity-generating & mobile genetic element discovery

81 6 0
garudlab
signature-snvs

Signature-SNVs a method for selecting signature SNVs from metagenomic data for input into FEAST for source tracking.

81 7 0
smdabdoub
phylotoast

Tools for phylogenetic data analysis including visualization and cluster-computing support.

67 15 3
biocore
qiita-spots

Qiita - A multi-omics databasing effort

62 135 82