PyRank

Microbiome Analysis Python Packages

Python packages with the GitHub topic microbiome-analysis. Sorted by relevance, with stars and monthly downloads.
amnona
dbbact-calour

dbBact (https://dbbact.org) interface for Calour (https://github.com/biocore/calour) for microbiome 16S analysis

465 1 0
GPZ-Bioinfo
tmap

topological data analysis of population-scale microbiomes

398 34 12
JelenaBanjac
microbiome-toolbox

Early Life Microbiome Toolbox

372 12 2
raeslab
dyspyosis

A python package to calculate the dysbiosis score in microbiome datasets

202 1 1
jordiabante
biodive

A reference-free statistical approach to diversity-generating & mobile genetic element discovery

202 6 0
smdabdoub
qiime-tools

Tools for phylogenetic data analysis including visualization and cluster-computing support.

177 15 3
garudlab
signature-snvs

Signature-SNVs a method for selecting signature SNVs from metagenomic data for input into FEAST for source tracking.

152 7 0
biocore
qiita-spots

Qiita - A multi-omics databasing effort

113 132 82
smdabdoub
phylotoast

Tools for phylogenetic data analysis including visualization and cluster-computing support.

107 15 3