PyRank

Microbiome Analysis Python Packages

Python packages with the GitHub topic microbiome-analysis. Sorted by relevance, with stars and monthly downloads.
amnona
dbbact-calour

dbbact-calour is a Calour (https://github.com/biocore/calour) interface for dbBact (dbbact.org)

432 1 0
JelenaBanjac
microbiome-toolbox

Microbiome Toolbox

356 12 2
GPZ-Bioinfo
tmap

topological data analysis of population-scale microbiomes

336 32 12
jordiabante
biodive

Discovery of k-mer sequences associated with high rates of sequence diversification.

170 6 0
raeslab
dyspyosis

A python package to calculate the dysbiosis score in microbiome datasets

161 1 1
garudlab
signature-snvs

Signature-SNVs a method for selecting signature SNVs from metagenomic data for input into FEAST for source tracking.

128 7 0
smdabdoub
qiime-tools

Tools for phylogenetic data analysis including visualization and cluster-computing support.

125 15 3
biocore
qiita-spots

Qiita - A multi-omics databasing effort

96 132 82
smdabdoub
phylotoast

Tools for phylogenetic data analysis including visualization and cluster-computing support.

65 15 3