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Microbial Communities Python Packages

Python packages with the GitHub topic microbial-communities. Sorted by monthly downloads, with stars and forks.
cdanielmachado
smetana

SMETANA: a tool to analyse interactions in microbial communities

324 79 15
sirno
misosoup

Minimal Supplying Community Search with constraint-based optimization methods.

246 16 3
ryansmcgee
pycrobe

A simple package for simulations of microbial growth experiments with realistic sources of error.

142 1 2
dizak
mothulity

Easy-to-use tool facilitating work with Mothur.

80 3 3
cdanielmachado
designmc

Designing microbial communities

51 8 4
cdanielmachado
hiorco

Higher-Order Co-occurrence

50 12 4
    • Original data from PyPI, GitHub, and OSV; downloads served through ClickHouse
    • Sources & methodology