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Metagenomic Classification Python Packages

Python packages with the GitHub topic metagenomic-classification. Sorted by monthly downloads, with stars and forks.
prophyle
prophyle

Accurate, resource-frugal and deterministic DNA sequence classifier.

768 38 5
taxprofiler
taxpasta

TAXnomic Profile Aggregation and STAndardisation

340 43 8
exabiome
gtnet

The Genome Taxonomy Network for assigning microbial taxonomy to DNA sequences

226 0 0
FOI-Bioinformatics
flextaxd

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

47 68 8
    • Original data from PyPI, GitHub, and OSV; downloads served through ClickHouse
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