Metagenomes Python Packages

pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

pyfastani

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

pyskani

PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.

gretel

An algorithm for recovering haplotypes from metagenomes

metagenomics-focus

FOCUS: An Agile Profiler for Metagenomic Data

plasflow

Software for prediction of plasmid sequences in metagenomic assemblies

mixs-linkml

Minimum Information about any (X) Sequence” (MIxS) specification