PyRank

Metagenomes Python Packages

Python packages with the GitHub topic metagenomes. Sorted by relevance, with stars and monthly downloads.
althonos
pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

43K 184 10
althonos
pyfastani

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

3K 24 2
althonos
pyskani

PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.

2K 29 2
smaegol
plasflow

PlasFlow - predicting plasmid sequences in metagenomic data

371 111 28
samstudio8
gretel

An algorithm for recovering potential haplotypes from metagenomes

217 30 3
metageni
metagenomics-focus

FOCUS: An Agile Profiler for Metagenomic Data

196 10 8
GenomicsStandardsConsortium
mixs-linkml

Minimum Information about any (X) Sequence” (MIxS) specification

181 63 24