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Metabolic Reconstruction Python Packages

Python packages with the GitHub topic metabolic-reconstruction. Sorted by relevance, with stars and monthly downloads.
opencobra
memote

memote – the genome-scale metabolic model test suite

3K 146 33
sysbiolux
wildkcat

Extract, Retrieve and Predict kcat values for a metabolic model

2K 6 0
cdiener
corda

Genome-scale model construction with CORDA

581 25 8
cnapy-org
cnapy

An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

557 66 18
korem-lab
pymgpipe

Python implementation of mgpipe

199 7 1
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