Metabolic Pathways Python Packages

kegganog

🤝 Tool for mining KEGG pathways completeness data from eggNOG-mapper annotations

sccellfie

scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.

efmtool-link

Exposes various efmtool functionality in Python.

biology-as-code

Biology as Code: Standardizing Nutrition Science for Preventive Medicine https://d1l2n4e9e74m3d.cloudfront.net/#cascade

nutramilo-nis

Open-source algorithm for estimating the relative insulinogenic potential of meals from nutritional composition.

metabolike

Identifying reprogrammed metabolic routes given omics data.

pathway-auditor

Framework for creating and validating biochemical pathway benchmarks