Metabolic Network Python Packages

cobra

COBRApy is a package for constraint-based modeling of metabolic networks.

metevolsim

MetEvolSim (Metabolome Evolution Simulator) Python Package

mpwt

Pathway Tools multiprocessing wrapper (for PathoLogic).

padmet

The PADMet package allows conciliating genomics and metabolic network information used to produce a genome-scale constraint-based metabolic model within a database that traces all the reconstruction process steps. It allows representing the metabolic model in the form of a Wiki containing all the used/traced information. Other standard outputs are made available with the package.

commmodelpy

Create stoichiometric metabolic network models of single-species or multi-species communities

psamm

Curation and analysis of metabolic models

corda

Genome-scale model construction with CORDA

efmlrs

Extracts EFMs from result file of mplrs and decompresses EFMs from efmtool and mplrs results that have been compressed with EFMlrs

findcpcore

findCP core package - find ChokePoint reactions in genome-scale metabolic models

findcpcli

findCP CLI package - find ChokePoint reactions in genome-scale metabolic models