PyRank

Metabolic Network Python Packages

Python packages with the GitHub topic metabolic-network. Sorted by relevance, with stars and monthly downloads.
opencobra
cobra

COBRApy is a package for constraint-based modeling of metabolic networks.

71K 575 234
zhanglab
psamm

Curation and analysis of metabolic models

1K 36 15
charlesrocabert
metevolsim

MetEvolSim (Metabolome Evolution Simulator) Python Package

1K 5 0
AuReMe
padmet

Python library for hAndling metaData of METabolism.

976 6 3
AuReMe
mpwt

Pathway Tools multiprocessing wrapper (for PathoLogic).

811 16 0
ARB-Lab
commmodelpy

Create stoichiometric metabolic network models of single-species or multi-species communities

754 3 0
BeeAnka
efmlrs

Extracts EFMs from result file of mplrs and decompresses EFMs from efmtool and mplrs results that have been compressed with EFMlrs

581 6 1
cdiener
corda

Genome-scale model construction with CORDA

434 26 8
findCP
findcpcore

findCP core package - find ChokePoint reactions in genome-scale metabolic models

432 1 0
findCP
findcpcli

findCP CLI package - find ChokePoint reactions in genome-scale metabolic models

325 3 0