Metabolic Network Python Packages

cobra

COBRApy is a package for constraint-based modeling of metabolic networks.

metevolsim

MetEvolSim (Metabolome Evolution Simulator). A Python package to simulate the long-term evolution of metabolic levels.

mpwt

Pathway Tools multiprocessing wrapper (for PathoLogic).

psamm

Curation and analysis of metabolic models

padmet

Python library for hAndling metaData of METabolism.

efmlrs

Python package and workflow for EFM calculation via (mp)lrs and efmtool

findcpcore

findCP core package - find ChokePoint reactions in genome-scale metabolic models

corda

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

findcpcli

findCP CLI package - find ChokePoint reactions in genome-scale metabolic models

commmodelpy

Create stoichiometric metabolic network models of single-species or multi-species communities