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Metabarcoding Python Packages

Python packages with the GitHub topic metabarcoding. Sorted by relevance, with stars and monthly downloads.
CIBIO-BU
mozaiko

Package aimed at ranking markers' adequacy towards freshwater biodiversity monitoring initiatives.

2K 0 0
DominikBuchner
boldigger

A python package to query different databases of boldsystems.org

1K 32 5
DominikBuchner
boldigger2

A python package to query different databases of boldsystems.org

1K 32 5
joshuaowalker
pyitsx

Fast ITS region detection and extraction using in-process HMM search

426 0 0
JasperBoom
caltha

A python package to process UMI tagged mixed amplicon metabarcoding data.

374 2 1
SushiLab
mtags

mTAGs - taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA gene.

107 6 2
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