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Metabarcoding Python Packages

Python packages with the GitHub topic metabarcoding. Sorted by monthly downloads, with stars and forks.
DominikBuchner
boldigger

A python package to query different databases of boldsystems.org

2K 33 5
DominikBuchner
boldigger2

A python package to query different databases of boldsystems.org

1K 33 5
CIBIO-BU
mozaiko

Package aimed at ranking markers' adequacy towards freshwater biodiversity monitoring initiatives.

245 0 0
joshuaowalker
pyitsx

Fast ITS region detection and extraction for Python, powered by in-process HMM search via pyhmmer

82 0 0
gjeunen
crabs

creating reference databases for amplicon sequencing

64 53 14
SushiLab
mtags

mTAGs - taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA gene.

48 7 2
    • Original data from PyPI, GitHub, and OSV; downloads served through ClickHouse
    • Sources & methodology