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Medicine Python Packages

Python packages with the GitHub topic medicine. Sorted by relevance, with stars and monthly downloads.
mims-harvard
pytdc

Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science

103K 1K 213
Medial-EarlySign
medpython

Medial Research Libs Infrastructure

2K 4 0
dermatologist
dhti-elixir-base

Base classes for dhti-elixir

1K 3 0
lucidrains
med-seg-diff-pytorch

MedSegDiff - SOTA medical image segmentation - Pytorch

1K 238 28
shz9
viprs

Variational Inference of Polygenic Risk Scores

874 31 4
fschwar4
pycohortflow

Lightweight Cohort Flow Diagrams built on Matplotlib — with an interactive browser-based generator.

816 0 0
teffalump
orthanc-rest-client

A REST client for Orthanc DICOM servers

723 19 3
AberystwythSystemsBiology
medialpy

A small python package that allows the user to look up common medical abbreviations.

697 13 2
cogstack
opengpt

A framework for creating grounded instruction based datasets and training conversational domain expert Large Language Models (LLMs).

578 364 45
lightbluetitan
meddatasets

The meddatasets library contains clinical research datasets, cancer diagnostic records, chronic disease statistics, smoking and cancer risk data, worldwide COVID-19 case records, water pollution and disease impact data, and much more.

530 2 0
teffalump
beren

REST client for Orthanc DICOM servers

528 19 3
zms-publishing
zms

Running on Python 3.10+

474 15 6
insilicomedicine
p3gpt

Wrappers for easier generative biology workflows

231 20 4
Ceyeborg
gs1grader

GS1Grader - Grading datamatrices based on GS1 guidelines

228 3 0
vanderschaarlab
temporai

TemporAI: ML-centric Toolkit for Medical Time Series

227 129 24
Medial-EarlySign
medpython-etl

Medial EarlySign ETL Library

191 2 0
SML-CompBio
oncomark

A deep learning tool designed to predict Cancer Hallmark activities from tumor biopsy samples.

152 3 0
cherenkov-plenoscope
ray-voxel-overlap

Estimating system-matrices for tomography

140 6 0
XanderJC
medkit-learn

The Medkit-Learn(ing) Environment: Medical Decision Modelling through Simulation (NeurIPS 2021) by Alex J. Chan, Ioana Bica, Alihan Huyuk, Daniel Jarrett, and Mihaela van der Schaar.

123 29 1
banderlog
drg2txt

Map MS-DRG v38.1 DRG/MDC numeric codes to their text description

114 1 0
zms-publishing
zms3

Running on Python 2.7 (stable, production ready)

49 3 1
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