Medicine Python Packages

pytdc

Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science

medpython

Medial Research Libs Infrastructure

dhti-elixir-base

Base classes for dhti-elixir

med-seg-diff-pytorch

Implementation of MedSegDiff in Pytorch - SOTA medical segmentation using DDPM and filtering of features in fourier space

orthanc-rest-client

A REST client for Orthanc DICOM servers

zms

Running on Python 3.10+

viprs

Variational Inference of Polygenic Risk Scores

medialpy

A small python package that allows the user to look up common medical abbreviations.

beren

A REST client for Orthanc DICOM servers

opengpt

A framework for creating grounded instruction based datasets and training conversational domain expert Large Language Models (LLMs).

meddatasets

The meddatasets library contains clinical research datasets, cancer diagnostic records, chronic disease statistics, smoking and cancer risk data, worldwide COVID-19 case records, water pollution and disease impact data, and much more.

gs1grader

GS1Grader - Grading datamatrices based on GS1 guidelines

pycohortflow

Lightweight cohort flow diagrams built on Matplotlib.

medpython-etl

Medial Research Tools for Machine learning in medical data, EMR

temporai

TemporAI: ML-centric Toolkit for Medical Time Series

p3gpt

Wrappers for easier generative biology workflows

ray-voxel-overlap

Estimate the tomographic system-matrix for rays in voxels.

drg2txt

Mapper for MS-DRG v38.1 (DRG/MDC numeric codes to their text description)

oncomark

A deep learning tool designed to predict Cancer Hallmark activities from tumor biopsy samples.

medkit-learn

Medical sequential decision making simulation tools.

zms3

Running on Python 2.7 (stable, production ready)