Medicine Python Packages

pytdc

Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science

medpython

Medial Research Libs Infrastructure

viprs

Variational Inference of Polygenic Risk Scores

anasim-simulator

Real-time anesthesia simulation engine for medical education.

orthanc-rest-client

A REST client for Orthanc DICOM servers

beren

A REST client for Orthanc DICOM servers

med-seg-diff-pytorch

Implementation of MedSegDiff in Pytorch - SOTA medical segmentation using DDPM and filtering of features in fourier space

medialpy

A small python package that allows the user to look up common medical abbreviations.

opengpt

A framework for creating grounded instruction based datasets and training conversational domain expert Large Language Models (LLMs).

zms

Running on Python 3.10+

p3gpt

Wrappers for easier generative biology workflows

gs1grader

GS1Grader - Grading datamatrices based on GS1 guidelines

pycohortflow

Lightweight cohort flow diagrams built on Matplotlib.

drg2txt

Mapper for MS-DRG v38.1 (DRG/MDC numeric codes to their text description)

medpython-etl

Medial Research Tools for Machine learning in medical data, EMR

temporai

TemporAI: ML-centric Toolkit for Medical Time Series

ray-voxel-overlap

Estimating system-matrices for tomography

oncomark

A deep learning tool designed to predict Cancer Hallmark activities from tumor biopsy samples.

meddatasets

The meddatasets library contains clinical research datasets, cancer diagnostic records, chronic disease statistics, smoking and cancer risk data, worldwide COVID-19 case records, water pollution and disease impact data, and much more.

medkit-learn

The Medkit-Learn(ing) Environment: Medical Decision Modelling through Simulation (NeurIPS 2021) by Alex J. Chan, Ioana Bica, Alihan Huyuk, Daniel Jarrett, and Mihaela van der Schaar.