Medical Image Segmentation Python Packages

mmsegmentation

OpenMMLab Semantic Segmentation Toolbox and Benchmark.

seqseg

SeqSeg (Sequential Vessel Segmentation)

paddleseg

Easy-to-use image segmentation library with awesome pre-trained model zoo, supporting wide-range of practical tasks in Semantic Segmentation, Interactive Segmentation, Panoptic Segmentation, Image Matting, 3D Segmentation, etc.

fiducio

Post-hoc calibration for 2D/3D semantic segmentation in PyTorch: temperature, vector, matrix and Dirichlet scaling, translation-invariant variants, and decision-preserving calibrators. Official code of "Rethinking Post-Hoc Calibration in Semantic Segmentation" (TMLR)

eiseg

Easy-to-use image segmentation library with awesome pre-trained model zoo, supporting wide-range of practical tasks in Semantic Segmentation, Interactive Segmentation, Panoptic Segmentation, Image Matting, 3D Segmentation, etc.

miscnn

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

auditapp

AUDIT - Analysis & Evaluation Dashboard of Artificial Intelligence

miseval

a metric library for Medical Image Segmentation EVALuation

medreaders

Readers for medical imaging datasets

segprobe

Reproducible, model-agnostic prompt evaluation for medical segmentation.

medsegbench

[pip install medsegbench] 35x Standardized Medical Segmentation Datasets from Different Data Modalities

miscnn-tf-2-0

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

mmsegmentation-zzb

OpenMMLab Semantic Segmentation Toolbox and Benchmark.

miscnn-tf-1-14

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

ps-sues

Easy-to-use image segmentation library with awesome pre-trained model zoo, supporting wide-range of practical tasks in Semantic Segmentation, Interactive Segmentation, Panoptic Segmentation, Image Matting, 3D Segmentation, etc.