Medical Image Processing Python Packages

monai

AI Toolkit for Healthcare Imaging

torchio

Medical imaging processing for AI applications.

torchxrayvision

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

histomicstk

A Python toolkit for pathology image analysis algorithms.

rt-utils

A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

monai-weekly

AI Toolkit for Healthcare Imaging

dicomrttool

Services for reading DICOM files, RT structures, and dose files, as well as tools for converting numpy prediction masks back to an RT structure.

itk-tubetk

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

lungmask

Automated lung segmentation in CT

miscnn

Framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

medimgproc

Medical Image Processing module for viewing and editing.

medvision

python library for medical computer vision

mediml

Python Open-source package for medical images processing and radiomics features extraction.

dicom2jpg

A simple Python function tool to convert DICOM files into jpg/png/bmp/tiff files and numpy.ndarray

chameleoniq

ChameleonIQ: Nema-aware Image Quality Tool for Python

mipcandy

A Candy for Medical Image Processing

dlicv

A repository that allows users to apply the DLICV method to their brain imaging data.

medimage-pkg

Python Open-source package for medical images processing and radiomics features extraction.

tdsc-abus2023-pytorch

Grand Challenge TDSC ABUS 2023 dataset for pytorch

autorad

Radiomics-related modules for extraction and experimenting

plotscrollnumpyarrays

Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images

modelhub-ai

No description available

auditapp

AUDIT, Analysis & evalUation Dashboard of artIficial inTelligence

ietk-ret

Re-colorize and enhance color fundus images. Image Enhancement Toolkit for Retinal Fundus Images (IETK-Ret).