Medical Image Processing Python Packages

monai

AI Toolkit for Healthcare Imaging

480K 8K 2K

torchio

Medical imaging processing for AI applications.

102K 2K 270

torchxrayvision

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

82K 1K 252

histomicstk

A Python toolkit for pathology image analysis algorithms.

78K 476 128

monai-weekly

AI Toolkit for Healthcare Imaging

23K 8K 2K

rt-utils

A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

20K 256 75

dicomrttool

Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images

6K 108 32

lungmask

Automated lung segmentation in CT

4K 792 165

itk-tubetk

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

4K 57 59

pydcm

The complete DICOM toolkit for Python — every transfer syntax built in, no plugins, NumPy/PyTorch native, one wheel.

3K 1 1

mipcandy

Build a complete experiment pipeline for your PyTorch MIP model in 10 seconds.

2K 293 44

miscnn

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

2K 425 118

mediml

Python Open-source package for medical images processing and radiomics features extraction.

2K 8 2

retinal-thin-vessels

A Python package for computing the recall and precision scores specifically on thin vessels in retinal images and generating weight masks for BCE Loss to enhance models perfomance on segmenting these fine structures, as detailed in the paper "Vessel-Width-Based Metrics and Weight Masks for Retinal Blood Vessel Segmentation".

2K 4 1