Medical Image Processing Python Packages

monai

AI Toolkit for Healthcare Imaging

923K 9K 2K

torchio

Medical imaging processing for AI applications.

62K 2K 282

histomicstk

A Python toolkit for pathology image analysis algorithms.

61K 489 130

monai-weekly

AI Toolkit for Healthcare Imaging

53K 9K 2K

rt-utils

A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

17K 258 75

torchxrayvision

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

14K 1K 259

ggb

Implementation of GGB color space

11K 2 2

dicomrttool

Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images

5K 108 32

flip-utils

Federated Learning Interoperability Platform

3K 53 12

lungmask

Automated lung segmentation in CT

3K 797 165

itk-tubetk

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

3K 58 59

tdsc-abus2023-pytorch

Grand Challenge TDSC ABUS 2023 dataset for pytorch

2K 4 0

mediml

Python Open-source package for medical images processing and radiomics features extraction.

1K 8 2

chameleoniq

ChameleonIQ: Nema-aware Image Quality Tool for Python

1K 1 0

medimgproc

MedImgProc is a Medical Image Processing module for viewing and editing.

1K 2 0

miscnn

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

965 423 119

retinal-thin-vessels

A Python package for computing the recall and precision scores specifically on thin vessels in retinal images and generating weight masks for BCE Loss to enhance models perfomance on segmenting these fine structures, as detailed in the paper "Vessel-Width-Based Metrics and Weight Masks for Retinal Blood Vessel Segmentation".

740 4 1