Medical Image Analysis Python Packages

torchio

Medical imaging processing for AI applications.

102K 2K 270

torchxrayvision

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

82K 1K 252

medmnist

[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification

32K 1K 212

tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

10K 537 106

lungmask

Automated lung segmentation in CT

4K 792 165

unigradicon

uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)

3K 227 26

miscnn

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

2K 425 118

mediml

Python Open-source package for medical images processing and radiomics features extraction.

2K 8 2

dosma

An AI-powered open-source medical image analysis toolbox

779 75 16

aucmedi

a framework for Automated Classification of Medical Images

732 43 17

deepbrainseg

Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks

721 194 43

medimage-pkg

Python Open-source package for medical images processing and radiomics features extraction.

691 8 2

guava-rt

A geometrical upright-supine anatomical variation analysis framework

680 1 0

dlicv

DLICV - Deep Learning Intra Cranial Volume.

670 2 0

auditapp

AUDIT - Analysis & Evaluation Dashboard of Artificial Intelligence

590 8 2

digipathai

Deep Learning toolbox for WSI (digital histopatology) analysis

485 75 28

pykale

Knowledge-Aware machine LEarning (KALE): accessible machine learning from multiple sources for interdisciplinary research, part of the 🔥PyTorch ecosystem. ⭐ Star to support our work!

463 484 75

segauge

Geometrically-correct, DICOM-native evaluation metrics for medical image segmentation in Python: Dice, IoU, HD95, ASSD, Normalized Surface Dice, per-lesion detection F1, with bootstrap confidence intervals and subgroup/fairness slicing.

426 1 0