Medical Image Analysis Python Packages

torchio

Medical imaging processing for AI applications.

medmnist

[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification

torchxrayvision

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

unigradicon

uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)

lungmask

Automated lung segmentation in CT

mediml

Python Open-source package for medical images processing and radiomics features extraction.

miscnn

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

dlicv

A repository that allows users to apply the DLICV method to their brain imaging data.

dosma

An AI-powered open-source medical image analysis toolbox

guava-rt

Geometric Upright-supine Anatomical Variation Analysis framework

deepbrainseg

Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks

aucmedi

a framework for Automated Classification of Medical Images

auditapp

AUDIT - Analysis & Evaluation Dashboard of Artificial Intelligence

ctpelvimetry

Python package and CLI for automated CT pelvimetry and body-composition analysis with reproducible QC outputs.

pykale

Knowledge-Aware machine LEarning (KALE): accessible machine learning from multiple sources for interdisciplinary research, part of the 🔥PyTorch ecosystem. ⭐ Star to support our work!

radvis

RadVis (Radiology Visualization) is a visualization tool for medical images.

medimage-pkg

Python Open-source package for medical images processing and radiomics features extraction.

digipathai

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

mpunet

Multi-Planar UNet for autonomous segmentation of 3D medical images

mridc

Data Consistency Toolbox for Magnetic Resonance Imaging

ts2d

TotalSegmentator 2D: A Tool for Rapid Anatomical Structure Analysis

atommic

ATOMMIC: Advanced Toolbox for Multitask Medical Imaging Consistency

medigan

medigan - A Python Library of Pretrained Generative Models for Medical Image Synthesis