Medical Image Analysis Python Packages

torchio

Medical imaging processing for AI applications.

torchxrayvision

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

medmnist

[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification

tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

lungmask

Automated lung segmentation in CT

miscnn

Framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

unigradicon

uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)

mediml

Python Open-source package for medical images processing and radiomics features extraction.

deepbrainseg

Deep Learning tool for brain tumor segmentation.

aucmedi

AUCMEDI - a framework for Automated Classification of Medical Images

dlicv

A repository that allows users to apply the DLICV method to their brain imaging data.

pykale

Knowledge-Aware machine LEarning (KALE): accessible machine learning from multiple sources for interdisciplinary research, part of the 🔥PyTorch ecosystem. ⭐ Star to support our work!

dosma

An AI-powered open-source medical image analysis toolbox

medimage-pkg

Python Open-source package for medical images processing and radiomics features extraction.

digipathai

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

guava-rt

Geometric Upright-supine Anatomical Variation Analysis framework

auditapp

AUDIT, Analysis & evalUation Dashboard of artIficial inTelligence

radvis

A visualization tool for medical images

medigan

medigan - A Python Library of Pretrained Generative Models for Medical Image Synthesis

ts2d

TotalSegmentator 2D: A Tool for Rapid Anatomical Structure Analysis

mpunet

Multi-Planar UNet for autonomous segmentation of 3D medical images

atommic

Advanced Toolbox for Multitask Medical Imaging Consistency (ATOMMIC)

mridc

Data Consistency Toolbox for Magnetic Resonance Imaging

miscnn-tf-2-0

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning