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Mechanistic Modeling Python Packages

Python packages with the GitHub topic mechanistic-modeling. Sorted by monthly downloads, with stars and forks.
ulysseherbach
harissa

Simulation and inference of gene regulatory networks based on transcriptional bursting

384 13 1
blakeaw
pysb-pkpd

PySB add-on providing domain-specific macros and models for empirical and mechanistic PK/PD modeling.

60 11 8
Borealis-BioModeling
pysb-units

PySB add-on providing utilities to add units to models and perform dimensional analysis.

49 2 0
    • Original data from PyPI, GitHub, and OSV; downloads served through ClickHouse
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