Mathematical Modelling Python Packages

fxpmath

A python library for fractional fixed-point (base 2) arithmetic and binary manipulation with Numpy compatibility.

laddu

Amplitude analysis made short and sweet

pyoptinterface

Efficient modeling interface for mathematical optimization in Python

laddu-cpu

Amplitude analysis made short and sweet

omlt

Represent trained machine learning models as Pyomo optimization formulations

laddu-local

Amplitude analysis made short and sweet

actuarialmath

Python package to solve actuarial life-contingent risks

laddu-mpi

Amplitude analysis made short and sweet

flixopt

Vector based Energy Optimization Framework

biosimulators-test-suite

Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators

infomeasure

Python package for calculating various information measures, including entropy, mutual information, transfer entropy, and more, with support for both discrete and continuous variables.

bondgraphtools

A Multi-Physics Systems Modelling Library

portpy

Opensource Python project for cancer radiation treatment planning [AAPM'23]

desdeo

An open source computational and fullstack framework for interactive multiobjective optimization and decision-support..

pybondgraph

pyBondGraph is a Python library for modeling and analyzing linear bond graph systems using symbolic computation. It provides a domain-independent modeling framework for physical systems.

neurodiffeq

A library for solving differential equations using neural networks based on PyTorch, used by multiple research groups around the world, including at Harvard IACS.

memilio-simulation

Modular spatio-temporal models for epidemic and pandemic simulations

geco

Generators for Combinatorial Optimization

geometrify

Geometrify is a Python package for easy creation, manipulation, and analysis of 2D geometries, providing comprehensive tools for various operations.

hbmep

Hierarchical Bayesian estimation of MEP recruitment curves

mumot

Multiscale Modelling Tool - mathematical modelling without the maths

cetsax

CETSA-MS modelling toolkit for dose–response analysis, binder classification, Bayesian inference, ML curve typing, and proteome-wide stability networks.

contagion

Python package for node immunization and network contagion simulation

bilevelpy

An extensible Python framework for building, solving, and evaluating Gurobi-based optimization models.