Mathematical Modeling Python Packages

biosimulators-utils

Utilities for building standardized command-line interfaces for biosimulation software packages

kisao

Ontology of algorithms for analyzing biological models, their parameters, and their outputs

biosimulators-pyneuroml

BioSimulators-compliant command-line interface to the jNeuroML/pyNeuroML, NEURON, and NetPyNe simulation programs.

biosimulators-opencor

BioSimulators-compliant command-line interface to the OpenCOR simulation program.

biosimulators-rbapy

RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

lp-comp

Python library for coordinated planning in two-level systems, finding compromise solutions between a Center and Elements using mathematical models & a GUI.