Marker Genes Python Packages

piaso-tools

PIASO: Precise Integrative Analysis of Single-cell Omics

cytetype

Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

cosg

Accurate and fast cell marker gene identification with COSG

micti

MICTI- Marker gene Identification for Cell Type Identity

llm-sc-curator

Data-centric marker distillation for zero-shot cell-type and spatial annotation with LLMs.

celltypepilot

Agent-native, local-first plugin for auditable single-cell annotation with governed evidence, contrastive review, conservative abstention, and human-reviewed draft outputs.