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Marker Genes Python Packages

Python packages with the GitHub topic marker-genes. Sorted by relevance, with stars and monthly downloads.
NygenAnalytics
cytetype

Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

2K 132 17
genecell
piaso-tools

PIASO: Precise Integrative Analysis of Single-cell Omics

823 7 2
insilicolife
micti

Feature extraction approach in single-cell gene expression profiling for cell-type marker identification.

752 0 0
genecell
cosg

Accurate and fast cell marker gene identification with COSG

695 60 7
kenflab
llm-sc-curator

Data-centric marker distillation for zero-shot cell-type and spatial annotation with LLMs.

459 3 0
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