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Manifold Learning Python Packages

Python packages with the GitHub topic manifold-learning. Sorted by relevance, with stars and monthly downloads.
JustGlowing
minisom

:red_circle: MiniSom is a minimalistic implementation of the Self Organizing Maps

44K 2K 444
theislab
cellrank

CellRank: dynamics from multi-view single-cell data

10K 447 57
KrishnaswamyLab
phate

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

8K 547 82
dpeerlab
palantir

Single cell trajectory detection

6K 310 61
TorchDR
torchdr

TorchDR - PyTorch Dimensionality Reduction

4K 202 14
opthub-org
pytorch-bsf

PyTorch implementation of Bézier simplex fitting

2K 12 4
davisidarta
topometry

Systematically learn and evaluate the latent geometry of high-dimensional data, with a focus on scRNAseq analysis

990 106 5
ecm200
cub-tools

Caltech UCSD Birds Database Tools for PyTorch Image Classification

447 48 10
hanxiao
mlx-vis

Pure MLX implementations of UMAP, t-SNE, PaCMAP, TriMap, DREAMS, CNE, MMAE, and NNDescent for Apple Silicon. Metal GPU for computation and video rendering.

434 83 3
StatBiomed
snpmanifold

Manifold learning for single-cell single-nucleotide genetic variations

352 4 0
scikit-tda
dreimac

Dimensionality Reduction with Eilenberg-MacLane Coordinates

322 41 15
Pressio
pressio4py

pressio4py: projection-based model reduction for Python

309 10 0
ChenLiu-1996
dse-dsmi

Diffusion spectral entropy and diffusion spectral mutual information (https://arxiv.org/abs/2312.04823).

134 14 1
caokai1073
pamona

The software of Pamona, a partial manifold alignment algorithm.

108 22 3
KrishnaswamyLab
heatgeo

Embedding with the Heat-geodesic dissimilarity

103 6 2
JoshuaHess12
miaaim-python

MIAAIM: Multi-omics Image Alignment and Analysis by Information Manifolds

55 5 1
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