Magnetic Resonance Imaging Python Packages

medpy

Medical image processing in Python

sdcflows

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

tensorflow-mri

A Library of TensorFlow Operators for Computational MRI

asltk

The Arterial Spin Labeling (ASL) toolkit offer a general imaging processing api for ASL MRI techniques.

mirtorch

A PyTorch-powered differentiable image reconstruction/optimization toolbox

pycoilgen

Magnetic Field Coil Generator for Python, ported from CoilGen

dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

mri-distortion-toolkit

Characterisation and reporting of geometric distortion in MRI

niquery

A principled tool to query open neuroimaging datasets, extract relevant information and create new datasets for research

react-fmri

REACT: Receptor-Enriched Analysis of functional Connectivity by Targets

pycoilgen-data

Magnetic Field Coil Generator for Python, ported from CoilGen

nifreeze

A flexible framework for volume-wise artifact estimation and correction across multiple 4D neuroimaging modalities (diffusion MRI, functional MRI, and PET)

medigan

medigan is a modular open-source Python library that provides an interface to multiple generative models and automates synthetic dataset generation.

pycoilgen-utils

Extra utilities for pyCoilGen, the Open Source Magnetic Resonance Coil Generator.

mri-distortionqa

Characterisation and reporting of geometric distortion in MRI