Magnetic Resonance Imaging Python Packages

medpy

Medical image processing in Python

sdcflows

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

tensorflow-mri

A Library of TensorFlow Operators for Computational MRI

asltk

A quick to use library to process images for MRI Arterial Spin Labeling imaging protocols.

mirtorch

A PyTorch-powered differentiable image reconstruction/optimization toolbox

mri-distortion-toolkit

Quality assurance tools for MRI geometric distortion

pycoilgen

Magnetic Field Coil Generator for Python, ported from CoilGen

medigan

medigan - A Python Library of Pretrained Generative Models for Medical Image Synthesis

dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data.

pycoilgen-data

Magnetic Field Coil Generator for Python, ported from CoilGen

react-fmri

A Python package that implements REACT: Receptor-Enriched Analysis of Functional Connectivity by Targets

nifreeze

A flexible framework for volume-wise artifact estimation and correction across multiple 4D neuroimaging modalities (diffusion MRI, functional MRI, and PET)

niquery

A principled tool to query open neuroimaging datasets, extract relevant information and create new datasets for research

pycoilgen-utils

Magnetic Field Coil Generator for Python, ported from CoilGen