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Longitudinal Data Python Packages

Python packages with the GitHub topic longitudinal-data. Sorted by relevance, with stars and monthly downloads.
simonprovost
scikit-longitudinal

Scikit-longitudinal is an open-source Python library for longitudinal data analysis, building on Scikit-learn's foundation with tools tailored for repeated measures data.

2K 78 5
SamoraHunter
pat2vec

A comprehensive Python package for healthcare data engineering, designed to extract, transform, and feature engineer patient data from CogStack-based electronic health record (EHR) datalakes. It provides tools for cohort building, batch data processing, clinical note analysis, and creating machine learning-ready datasets.

686 2 0
ZipengWu365
echotime

EchoTime: explainable structural similarity for time series and time-series datasets, with shareable HTML reports and agent-ready JSON.

672 2 0
gmiaslab
pyiomica

PyIOmica (pyiomica) is a Python package for omics analyses.

614 16 3
TheOmarLab
sctrial

Participant-level differential analysis for longitudinal single-cell experiments: DiD, paired comparisons, module scoring, pseudobulk, and power analysis.

334 2 0
hharcolezi
multi-freq-ldpy

Multiple Frequency Estimation Under Local Differential Privacy in Python

292 52 5
s-rani1
latrend

Python version similar to R latrend for longitudinal trajectory clustering and visualization.

134 1 0
uea-machine-learning
sktime-dl

DEPRECATED, now in sktime - companion package for deep learning based on TensorFlow

97 597 77
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