long-reads
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
A short tandem repeat (STR) genotyping and analysis toolkit for long reads
A universal toolkit for upstream processing of long RNA reads
Derives consensus sequences from a set of long noisy reads by clustering and error correction.
PEPPER-Margin-DeepVariant
Predict plasmids from uncorrected long read data
A fast, modular, streaming bioinformatics toolkit in Rust for FASTQ/FASTA/BAM — a platform that grows through modules, with strong long-read support.
Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
Graph-based assembly phasing
