Long Reads Python Packages

strkit

A short tandem repeat (STR) genotyping and analysis toolkit for long reads

pyabpoa

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

isocon

Derives consensus sequences from a set of long noisy reads by clustering and error correction.

pepper-polish

PEPPER-Margin-DeepVariant

tiptoft

Predict plasmids from uncorrected long read data

lapa

Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.

pyscaf

Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.

plasmidpredictor

Predict plasmids from uncorrected long read data