Long Read Python Packages

dysgu

Toolkit for calling structural variants using short or long reads

stranger

Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat

polyase

A package for analyzing allele-specific expression in polyploid organisms

hifisr

HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high-fidelity (HiFi) reads or Circular Consensus Sequencing (ccs) data, to a reference genome (i.e., the hypothetical master cycle DNA).

swan-vis

A Python library to visualize and analyze long-read transcriptomes

lafite

tool for long read transcriptome assembly

preqc-lr

preqclr is a software tool that reports on quality for long read sequencing data without the use of a reference genome.

preqclr

preqclr is a software tool that reports on quality for long read sequencing data without the use of a reference genome.