Linkage Disequilibrium Python Packages

pylocuszoom

pyLocusZoom -- publication-ready GWAS visualization in Python: LocusZoom-style regional association plots with LD coloring, gene tracks and recombination overlays, plus Manhattan, QQ, Miami, eQTL, fine-mapping, PheWAS and forest plots. Dog and cat genomes built in.

magenpy

Modeling and Analysis of (Statistical) Genetics data in python

ldetect-lite

Fast calculation of approximately independent linkage disequilibrium blocks

haplodynamics

A python library to develop genomic data simulators