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Liftover Python Packages

Python packages with the GitHub topic liftover. Sorted by relevance, with stars and monthly downloads.
konstantint
pyliftover

Pure-python implementation of UCSC liftOver genome coordinate conversion

58K 102 15
jeremymcrae
liftover

liftover for python, made fast with cython

18K 99 6
XiaoTaoWang
hiclift

A fast and efficient tool for converting chromatin interaction data between genome assemblies

1K 78 5
baudisgroup
segment-liftover

Lifterover copy number segments in whole

607 25 4
Kuanhao-Chao
lifton

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

446 123 11
josiahseaman
fluentdna

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

360 69 6
milescsmith
plinkliftover

Converts genotype data stored in plink's PED+MAP format from one genome build to another, using liftOver

197 5 1
XiaoTaoWang
pairliftover

Convert genomic coordinates of contact pairs from one assembly to another.

170 78 5
billzt
pyoverchain

a python pipeline to generate chain files between different genome assemblies for LiftOver.

114 7 2
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