Liftover Python Packages

pyliftover

Pure-python implementation of UCSC liftOver genome coordinate conversion

liftover

liftover for python, made fast with cython

hiclift

A fast and efficient tool for converting chromatin interaction data between genome assemblies

segment-liftover

Lifterover copy number segments in whole

lifton

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

fluentdna

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

plinkliftover

Converts genotype data stored in plink's PED+MAP format from one genome build to another, using liftOver

pairliftover

Convert genomic coordinates of contact pairs from one assembly to another.

pyoverchain

a python pipeline to generate chain files between different genome assemblies for LiftOver.