Liftover Python Packages

pyliftover

Pure-python implementation of UCSC liftOver genome coordinate conversion

liftover

liftover for python, made fast with cython

lifton

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

liftassess

Python tool for assessing genomic coordinate liftOver results using exact alignment geometry, UCSC comparative evidence, reverse liftOver and flanking-context checks, and provenance-aware interpretation.

segment-liftover

Lifterover copy number segments in whole

fluentdna

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

pairliftover

A fast and efficient tool for converting chromatin interaction data between genome assemblies

plinkliftover

Perform liftover on plink files

hiclift

A fast and efficient tool for converting chromatin interaction data between genome assemblies

pyoverchain

a python pipeline to generate chain files between different genome assemblies for LiftOver.