Liftover Python Packages

pyliftover

Pure-python implementation of UCSC liftOver genome coordinate conversion

liftover

liftover for python, made fast with cython

hiclift

A fast and efficient tool for converting chromatin interaction data between genome assemblies

lifton

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

segment-liftover

Lifterover copy number segments in whole

fluentdna

Visualization tool for bare fasta files. Supports whole genome alignment and multiple sequence alignment.

plinkliftover

Perform liftover on plink files

pairliftover

Convert genomic coordinates of contact pairs from one assembly to another.

pyoverchain

a python pipeline to generate chain files between different genome assemblies for LiftOver.