Kmer Python Packages

sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets.

smudgeplot

Inference of ploidy and heterozygosity structure using whole genome sequencing data

biosaic

KMer level tokenizer for DNA & Proteins sequences

kcollections

An efficient kmer data structure for genomic applications.

pymer

pymer: Pythonic fast k-mer counting routines

stringmlst

Fast k-mer based tool for alignment and assembly-free multi locus sequence typing (MLST) directly from genome sequencing reads.

metagenomics-focus

FOCUS: An Agile Profiler for Metagenomic Data

tiptoft

Predict plasmids from uncorrected long read data

kmerhash

Generate hash values from a sequence corresponding to kmers in the sequence

plasmidpredictor

Predict plasmids from uncorrected long read data

freqgen

Generate DNA sequences with specified amino acid, codon, and k-mer frequencies.

kman

K-Mer management tools