Kmer Python Packages

sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets.

11K 542 92

biosaic

KMer level tokenizer for DNA & Proteins sequences

601 0 0

smudgeplot

Inference of ploidy and heterozygosity structure using whole genome sequencing data

519 294 28

kcollections

An efficient kmer data structure for genomic applications.

398 2 0

stringmlst

Fast k-mer based tool for multi locus sequence typing (MLST)

269 46 8

pymer

pymer: Pythonic fast k-mer counting routines

255 0 1

metagenomics-focus

FOCUS: An Agile Profiler for Metagenomic Data

196 10 8

kmerhash

Convert python string to hashed kmers and back again

181 3 0

tiptoft

Predict plasmids from uncorrected long read data

180 41 10

plasmidpredictor

Predict plasmids from uncorrected long read data

82 41 10

freqgen

🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies

78 17 4

kman

K-Mer management tools

40 0 0