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Kinetic Modeling Python Packages

Python packages with the GitHub topic kinetic-modeling. Sorted by monthly downloads, with stars and forks.
AMICI-dev
amici

High-performance sensitivity analysis for large ordinary differential equation models

6K 144 33
PySCeS
pysces

The official PySCeS project source code repository.

4K 40 10
markovmodel
pyemma

🚂 Python API for Emma's Markov Model Algorithms 🚂

2K 340 130
biomass-dev
biomass

A Python Framework for Modeling and Analysis of Signaling Systems

2K 30 14
SystemsBioinformatics
stochpy

StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks

785 44 11
pasmopy
pasmopy

Patient-Specific Modeling in Python

442 19 7
bowman-lab
enspara

Modeling molecular ensembles with scalable data structures and parallel computing

157 37 16
tintin554
multilayerpy

A package to build, run and optimise a kinetic multi-layer model for aerosol particles and films

56 12 1
KarrLab
wc-rules

Rule-based modeling for whole-cell models.

0 10 3
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