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K Mers Python Packages

Python packages with the GitHub topic k-mers. Sorted by relevance, with stars and monthly downloads.
prophyle
prophyle

Accurate, resource-frugal and deterministic DNA sequence classifier.

798 36 5
microbial-pangenomes-lab
panfeed

A k-mer counter that streams gene-cluster specific k-mers, while keeping k-mer positional information. Useful for microbial GWAS analyses with higher interpretability.

356 9 0
spacegraphcats
spacegraphcats

Indexing & querying large assembly graphs -- in space, no one can hear you miao!

307 120 15
liaoherui
strainscan

High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers

228 44 7
    • Data from PyPI, GitHub, ClickHouse, and BigQuery