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K Mers Python Packages

Python packages with the GitHub topic k-mers. Sorted by monthly downloads, with stars and forks.
prophyle
prophyle

Accurate, resource-frugal and deterministic DNA sequence classifier.

768 38 5
microbial-pangenomes-lab
panfeed

A k-mer counter that streams gene-cluster specific k-mers, while keeping k-mer positional information. Useful for microbial GWAS analyses with higher interpretability.

266 9 0
liaoherui
strainscan

High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers

205 45 7
spacegraphcats
spacegraphcats

Indexing & querying large assembly graphs -- in space, no one can hear you miao!

181 120 15
    • Original data from PyPI, GitHub, and OSV; downloads served through ClickHouse
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