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K Mer Counting Python Packages

Python packages with the GitHub topic k-mer-counting. Sorted by relevance, with stars and monthly downloads.
raw-lab
mercat2

MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data

1K 13 1
microbial-pangenomes-lab
panfeed

A k-mer counter that streams gene-cluster specific k-mers, while keeping k-mer positional information. Useful for microbial GWAS analyses with higher interpretability.

356 9 0
andrewdalpino
dnahash

A specialized datastructure and tokenization library for counting genetic sequences for use in Machine Learning and Bioinformatics.

304 3 0
MatthewRalston
kmerdb

Python CLI for alignment-free genomics.

173 13 1
arriam-lab2
yack

Yet another k-mer counter

93 1 0
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