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K Mer Counting Python Packages

Python packages with the GitHub topic k-mer-counting. Sorted by relevance, with stars and monthly downloads.
MatthewRalston
kmerdb

Python CLI for alignment-free genomics.

1K 13 1
andrewdalpino
dnahash

A specialized datastructure and tokenization library for counting genetic sequences for use in Machine Learning and Bioinformatics.

391 2 0
microbial-pangenomes-lab
panfeed

Compute gene-cluster specific k-mers over a pangenome

302 9 0
raw-lab
mercat2

MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data

231 13 1
arriam-lab2
yack

fast and lightweight counting of short k-mers

51 1 0
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