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Interval Tree Python Packages

Python packages with the GitHub topic interval-tree. Sorted by relevance, with stars and monthly downloads.
pyranges
ncls

NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.

84K 223 24
deeptools
deeptoolsintervals

A python library for constructing interval trees with associated exon/annotation information

6K 6 2
kylessmith
ailist

Augmented Interval Tree implemented in Cython/C

2K 20 1
konstantint
pyintervaltree

A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.

338 3 1
mikpom
rbi-tree

Cython-wrapped C++ red-black interval tree implementation

204 0 0
konstantint
intervaltree-bio

Interval tree convenience classes for genomic data

183 7 7
cool-pot
pytrees

python3 implementation of trees. Including AVL Tree, Interval Tree and More.

85 9 6
drsuuzzz
murphy

Generic tools to support parsing gtf/gff files and identifying overlapping genomic regions

76 0 1
bm371613
slice-aggregator

A library for aggregating values assigned to indices by slices and the other way around

55 1 0
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