PyRank

Infectious Diseases Python Packages

Python packages with the GitHub topic infectious-diseases. Sorted by relevance, with stars and monthly downloads.
sanger-pathogens
pyfastaq

Python3 scripts to manipulate FASTA and FASTQ files

3K 73 21
epispot
epispot-nightly

A tool for modeling infectious diseases.

1K 18 6
sanger-pathogens
ariba

ARIBA: Antibiotic Resistance Identification By Assembly

1K 187 60
sanger-pathogens
circlator

A tool to circularize genome assemblies

640 256 57
epispot
epispot

A tool for modeling infectious diseases.

326 18 6
sanger-pathogens
iva

de novo virus assembler of Illumina paired reads

259 58 19
nathangeffen
ziggie

Python package for infectious disease modelling

191 1 0
quadram-institute-bioscience
albatradis

Comparative TraDIS analysis

185 9 4
andrewjpage
tiptoft

Predict plasmids from uncorrected long read data

174 41 10
sanger-pathogens
seroba

k-mer based Pipeline to identify the Serotype from Illumina NGS reads

92 25 20
andrewjpage
plasmidpredictor

Predict plasmids from uncorrected long read data

80 41 10
raghavagps
fluspred

A bioinformatic-ware to predict the zoonotic host tropism of Influenza A virus.

71 3 1