In Silico Python Packages

brain-indexer

Create indexes of simple shapes and find all indexed elements that intersect with a query region.

pypef

PyPEF – Pythonic Protein Engineering Framework

functionalizer

Create a functional connectome from physical connections between cells

insidapy

In-silico data generation package. Easy and consistent generation of example data for chemical/biochemical reaction case studies.

overreact

⚛️📈 Create and analyze chemical microkinetic models built from computational chemistry data. Crafted at the @geem-lab.

zer0pa-materials-workbench

Zer0pa Materials Workbench — research infrastructure for in silico materials science discovery

braingenix

[Mirror of https://gitlab.braingenix.org/carboncopies/] BrainGenix-NES is a cutting-edge simulation platform for whole brain emulation research and development that supports digitally replicating both form and function of brain tissue. Developed by the Carboncopies Foundation's BrainGenix initiative, it complements the Virtual Brain Platform (VBP).