In Silico Python Packages

brain-indexer

Create indexes of simple shapes and find all indexed elements that intersect with a query region.

pypef

A tool for performing data-driven protein engineering by building machine learning models from protein variant fitness data.

zer0pa-materials-workbench

CPU-verified in silico materials research control plane. Battery + thermoelectric pipeline staged for H100 GPU evidence campaign. Research infrastructure, not a discovery engine.

insidapy

In-silico data generation package. Easy and consistent generation of example data for chemical/biochemical reaction case studies.

functionalizer

Create a functional connectome from physical connections between cells

overreact

⚛️📈 Create and analyze chemical microkinetic models built from computational chemistry data