Immunoinformatics Python Packages

lzgraphs

LZ76 Graphs and Applications in Immunology

tidytcells

Standardise TR/MH/IG data

iptkl

A pythonic library for analysing immunopeptidomic experiments

setriq

Fast string distance computation in Python

sceptr

Highly informative TCR representation model

algpred2

A machine learning based method for predicting, scanning and mapping allergenic regions in an allergen

protpeptigram

Mapping peptides to source protein for immunopeptidiomics data analysis

ifnepitope2

Prediction of interferon-gamma inducing peptides using alignment-based and alignment-free methods

mhc-tp

Peptides motif search tool and Source protein mappers

clbtope

CLBTope:A computational approach had been developed for predicting both types (linear/conformational) of B-cell epitopes.

pygempick

Open Source python module to enable batch gold particle picking, filtering, processing & statistical modelling of TEM images produced by IGEM (immunogold electron microscopy).

pybatman

Bayesian inference of Activation of TCR by Mutant Antigens

il5pred

A tool to predict il5 inducing peptides

il13pred

A tool for predicting immunoregulatory cytokine IL-13 inducing peptides

il6pred

A method for predicting and designing IL-6 inducing peptides.