PyRank

Immunofluorescence Python Packages

Python packages with the GitHub topic immunofluorescence. Sorted by relevance, with stars and monthly downloads.
mathisbouvet
macsima-qc

Quality control pipeline for MACSima / MACSiQView cell segmentation

2K 1 0
SilMon
nucdetect

Python interface to detect and quantify intranuclear proteins

2K 3 0
mathisbouvet
spatial-cluster-compare

Automated benchmarking and selection of clustering algorithms (KMeans, Agglomerative, Spectral, GMM, DBSCAN) for spatial/multiplex immunofluorescence data, using Hopkins statistic, PCA, multi-metric evaluation (Silhouette, Davies-Bouldin, Calinski-Harabasz, ARI stability) and automatic best-method selection.

1K 3 0
Jay2owe
pyflash-analysis

ImageJ confocal microscopy data processing and analysis pipeline

987 0 0